BioJupies Automatically Generates RNA-seq Data Analysis Notebooks
With BioJupies you can produce in seconds a customized, reusable, and interactive report from your own raw or processed RNA-seq data through a simple user interface
To acknowledge BioJupies in your publications, please use the following reference:
Torre, D., Lachmann, A., and Ma’ayan, A. (2018). BioJupies: Automated Generation of Interactive Notebooks for RNA-Seq Data Analysis in the Cloud. Cell Systems.
BioJupies now supports user accounts! Sign in from the top right corner of the page for access to unlimited private notebooks, RNA-seq datasets and alignment jobs.
How to Create a Notebook?
1. Upload or Fetch Data
Select from thousands of ready-to-analyze RNA-seq datasets, or upload your own
2. Select Tools
Choose from multiple data analysis and visualization tools, or contribute your own code
3. Generate
Create, access and share your analysis notebooks through a permanent and public URL
Customize Your Analysis
Rerun Your Notebooks
Download, run and customize your analysis notebooks using a Docker container
